PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590376.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family S1Fa-like
Protein Properties Length: 69aa    MW: 7582.21 Da    PI: 10.7953
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.72.2e-42369470
            S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    + veakG+nPGlivll++ggl+l fl+gny+lyvyaqk+lPP+kkkP+skkk+kre+lkqGv++PGe
  XP_009590376.1  3 NDVEAKGFNPGLIVLLLIGGLVLAFLIGNYVLYVYAQKTLPPKKKKPLSKKKMKRERLKQGVSAPGE 69
                    689***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190137.0E-5369No hitNo description
PfamPF046891.4E-39569IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MANDVEAKGF NPGLIVLLLI GGLVLAFLIG NYVLYVYAQK TLPPKKKKPL SKKKMKRERL  60
KQGVSAPGE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2547222e-65AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBankHG9755222e-65HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590376.17e-42PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423371e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA32e-25W9SCA3_9R
STRINGPGSC0003DMT4000044413e-21(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249